5XHK Transcription date Apr 21, 2017
title Crystal Structure Of The Brd2-Bd2 In Complex With Phenanthri
authors B.Padmanabhan, S.Mathur, S.Tripathi, P.Deshmukh
compound source
Molecule: Bromodomain-Containing Protein 2
Chain: A
Fragment: Unp Residues 348-455
Synonym: O27.1.1,Really Interesting New Gene 3 Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brd2, Kiaa9001, Ring3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 2 21 21
R_factor 0.157 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.040 52.510 71.370 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.28 Å
ligand 2ME, GOL, LDR enzyme
Primary referenceInsights into the crystal structure of BRD2-BD2 - phenanthridinone complex and theoretical studies on phenanthridinone analogs., Mathur S, Deshmukh P, Tripathi S, Marimuthu P, Padmanabhan B, J Biomol Struct Dyn. 2017 Jul 31:1-19. doi: 10.1080/07391102.2017.1353441. PMID:28696179
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (5xhk.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 5XHK
  • CSU: Contacts of Structural Units for 5XHK
  • Structure Factors (1136 Kb)
  • Retrieve 5XHK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XHK from S2C, [Save to disk]
  • View 5XHK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XHK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xhk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XHK
  • Community annotation for 5XHK at PDBWiki (http://pdbwiki.org)

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