5XHZ Protein Binding date Apr 25, 2017
title Crystal Structure Analysis Of Cin85-Sh3b In Complex With Ara
authors W.Liu, W.Yang
compound source
Molecule: Sh3 Domain-Containing Kinase-Binding Protein 1
Chain: A, B
Fragment: Sh3b (Unp Residues 98-157)
Synonym: Regulator Of Ubiquitous Kinase,Ruk,Sh3-Containing, In Tumorigenic Astrocytes;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Sh3kbp1, Ruk, Seta
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a

Molecule: Arf-Gap With Rho-Gap Domain, Ank Repeat And Ph Do Containing Protein 1;
Chain: C, D
Fragment: P2 (Unp Residues 80-90)
Synonym: Centaurin-Delta-2,Cnt-D2
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
symmetry Space Group: P 43
R_factor 0.163 R_Free 0.187
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.162 66.162 34.935 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.32 Å
ligand ACT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBiochemical and Structural Studies of the Interaction between ARAP1 and CIN85., Li Q, Yang W, Wang Y, Liu W, Biochemistry. 2018 Apr 10;57(14):2132-2139. doi: 10.1021/acs.biochem.8b00057., Epub 2018 Mar 28. PMID:29589748
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (5xhz.pdb1.gz) 15 Kb
  • Biological Unit Coordinates (5xhz.pdb2.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 5XHZ
  • CSU: Contacts of Structural Units for 5XHZ
  • Structure Factors (183 Kb)
  • Retrieve 5XHZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XHZ from S2C, [Save to disk]
  • View 5XHZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XHZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xhz_C] [5xhz_D] [5xhz_B] [5xhz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XHZ
  • Community annotation for 5XHZ at PDBWiki (http://pdbwiki.org)

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