5XM0	Structural Protein Dna	date	May 12, 2017
title	The Mouse Nucleosome Structure Containing H2a, H2b Type3-A, H4
authors	H.Taguchi, N.Horikoshi, H.Kurumizaka
compound		source
Molecule: Histone H3.3 Chain: A, E Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: H3f3a, H3.3a, H3f3b, H3.3b Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ph3.3
Molecule: Histone H4 Chain: B, F Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Hist1h4a, Hist1h4b, H4-53, Hist1h4c, H4-12, Hist1h4d, Hist1h4f, Hist1h4h, Hist1h4i, Hist1h4j, Hist1h4k, Hist1h4m, Hist2h4a, Hist2h4, Hist4h4; Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109(De3)
Molecule: Histone H2a Type 1-B Chain: C, G Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Hist1h2ab Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ph2a
Molecule: Histone H2b Type 3-A Chain: D, H Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Hist3h2ba Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ph2b
Molecule: Dna (146-Mer) Chain: I, J Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Dh5alpha Expression_system_taxid: 668369 Expression_system_strain: Dh5alpha Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgem-T(Easy)
symmetry	Space Group: P 21 21 21	R_factor 0.219 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 106.523 110.095 182.264 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.87 Å
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D
Primary reference	Histone H3.3 sub-variant H3mm7 is required for normal skeletal muscle regeneration., Harada A, Maehara K, Ono Y, Taguchi H, Yoshioka K, Kitajima Y, Xie Y, Sato Y, Iwasaki T, Nogami J, Okada S, Komatsu T, Semba Y, Takemoto T, Kimura H, Kurumizaka H, Ohkawa Y, Nat Commun. 2018 Apr 11;9(1):1400. doi: 10.1038/s41467-018-03845-1. PMID:29643389

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk] Biological Unit Coordinates (5xm0.pdb1.gz) 234 Kb CSU: Contacts of Structural Units for 5XM0 Structure Factors (1683 Kb) Retrieve 5XM0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5XM0 from S2C, [Save to disk]

View 5XM0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5XM0

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5xm0_A] [5xm0_H] [5xm0_J] [5xm0_D] [5xm0_B] [5xm0_C] [5xm0_F] [5xm0_I] [5xm0_G] [5xm0_E] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5XM0 at PDBWiki (http://pdbwiki.org)

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