5XM8	Transferase Dna	date	May 13, 2017
title	Crystal Structure Of Asfvpolx In Complex With Dna Enzyme And
authors	H.H.Liu, J.H.Gan
compound		source
Molecule: Repair Dna Polymerase X Chain: A, B, C, D Synonym: Pol X Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: African Swine Fever Virus (Strain Bada Vero-Adapted); Organism_common: Ba71v Organism_taxid: 10498 Strain: Badajoz 1971 Vero-Adapted Gene: Ba71v-97, O174l Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (36-Mer) Chain: E, G Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (23-Mer) Chain: F, H Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: C 2 2 21	R_factor 0.235 R_Free 0.283
crystal cell	length a length b length c angle alpha angle beta angle gamma 98.727 118.848 235.979 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.55 Å
ligand	PB, PO4	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B DNA-directed DNA polymerase ...
Primary reference	Crystal structure of an RNA-cleaving DNAzyme., Liu H, Yu X, Chen Y, Zhang J, Wu B, Zheng L, Haruehanroengra P, Wang R, Li S, Lin J, Li J, Sheng J, Huang Z, Ma J, Gan J, Nat Commun. 2017 Dec 8;8(1):2006. doi: 10.1038/s41467-017-02203-x. PMID:29222499

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (350 Kb) [Save to disk] Biological Unit Coordinates (5xm8.pdb1.gz) 173 Kb Biological Unit Coordinates (5xm8.pdb2.gz) 175 Kb LPC: Ligand-Protein Contacts for 5XM8 CSU: Contacts of Structural Units for 5XM8 Structure Factors (1017 Kb) Retrieve 5XM8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5XM8 from S2C, [Save to disk]

View 5XM8 in 3D

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Visual 3D analysis of 5XM8

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5xm8_B] [5xm8_A] [5xm8_G] [5xm8_C] [5xm8_E] [5xm8_F] [5xm8_H] [5xm8_D] SWISS-PROT database: Domain organization of by SWISSPFAM

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