5XNV	Protein Binding Peptide	date	May 24, 2017
title	Crystal Structure Of Yeats2 Yeats Bound To H3k27ac Peptide
authors	H.T.Li, H.P.Guan, D.Zhao
compound		source
Molecule: Yeats Domain-Containing Protein 2 Chain: A Fragment: Unp Residues 201-332 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Yeats2, Kiaa1197 Expression_system: Escherichia Coli K-12 Expression_system_taxid: 83333 Expression_system_strain: K-12
Molecule: Ala-Ala-Arg-Aly-Ser-Ala-Pro-Ala Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: I 4 2 2	R_factor 0.224 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.826 72.826 125.232 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	ALY, CL, NH4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	YEATS2 links histone acetylation to tumorigenesis of non-small cell lung cancer., Mi W, Guan H, Lyu J, Zhao D, Xi Y, Jiang S, Andrews FH, Wang X, Gagea M, Wen H, Tora L, Dent SYR, Kutateladze TG, Li W, Li H, Shi X, Nat Commun. 2017 Oct 20;8(1):1088. doi: 10.1038/s41467-017-01173-4. PMID:29057918

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk] Biological Unit Coordinates (5xnv.pdb1.gz) 24 Kb LPC: Ligand-Protein Contacts for 5XNV CSU: Contacts of Structural Units for 5XNV Structure Factors (69 Kb) Retrieve 5XNV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5XNV from S2C, [Save to disk]

View 5XNV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5XNV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5xnv_A] [5xnv_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5XNV

Community annotation for 5XNV at PDBWiki (http://pdbwiki.org)

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