5XQI
Cell Cycle
date
Jun 07, 2017
title
Crystal Structure Of Full-Length Human Rogdi
authors
H.Lee, C.Lee
compound
source
Molecule
: Protein Rogdi Homolog
Chain
: A, B, C, D
Engineered
: Yes
Organism_scientific
: Homo Sapiens
Organism_common
: Human
Organism_taxid
: 9606
Gene
: Rogdi
Expression_system
: Escherichia Coli Bl21(De3)
Expression_system_taxid
: 469008
Expression_system_strain
: Bl21(De3)
symmetry
Space Group
: H 3
R_factor
0.219
R_Free
0.268
crystal
cell
length a
length b
length c
angle alpha
angle beta
angle gamma
169.372
169.372
220.323
90.00
90.00
120.00
method
X-Ray Diffraction
resolution
2.80 Å
Gene
Ontology
Chain
Function
Process
Component
A, D, C, B
Data retrieval
Asymmetric unit, PDB entry:
[header only]
[complete with coordinates]
(178 Kb)
[Save to disk]
Biological Unit Coordinates
(5xqi.pdb1.gz) 514 Kb
CSU:
Contacts of Structural Units
for 5XQI
Structure Factors
(1568 Kb)
Retrieve 5XQI in
mmCIF
format
[Save to disk]
SEQRES to COORDINATES
correlation for
5XQI
from
S2C
,
[Save to disk]
Re-refined
5xqi
structure from
PDB_REDO
, a databank with updated and optimised macromolecular X-ray diffraction structure models
View 5XQI in 3D
Proteopedia
, because life has more than 2D.
On
Jmol
, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
On
FirstGlance
, an excellent tool for a guided tour on the structure components, by
E. Martz
.
Visual 3D analysis of 5XQI
Ramachandran
plot from
PDBSum
Structure-derived information
Electron Density
related parameters from
EDS
Electron Density Server, at Upsala
Dipole
moment, from
Dipole Server
at Weizmann Institute
Sequence-derived information
View one-letter amino acid or nucleotide sequence for each chain:
[5xqi_A]
[5xqi_D]
[5xqi_C]
[5xqi_B]
SWISS-PROT
database:
Domain
organization of by
SWISSPFAM
Other resources with information on 5XQI
Community annotation for
5XQI
at
PDBWiki
(http://pdbwiki.org)
You may enter another PDB ID code
Go [
Back
], to the [
PDB Lite
page], to the [
OCA Search
page] or to the [
PDB Home
page]
OCA© by
Jaime Prilusky
, 1996-2014,2022
Bioinformatics Unit
Weizmann Institute of Science