5XRZ Recombination date Jun 11, 2017
title Structure Of A Ssdna Bound To The Inner Dna Binding Site Of
authors M.Saotome, K.Saito, T.Yasuda, S.Sugiyama, H.Kurumizaka, W.Kagawa
compound source
Molecule: Dna Repair Protein Rad52 Homolog
Chain: A, B, C, D, E, F, G, H, I, J, K
Fragment: Unp Residues 1-212
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rad52
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: Ssdna (40-Mer)
Chain: L
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1
R_factor 0.217 R_Free 0.257
length a length b length c angle alpha angle beta angle gamma
67.621 101.420 101.710 91.89 108.68 108.17
method X-Ray Diffractionresolution 3.60 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (344 Kb) [Save to disk]
  • Biological Unit Coordinates (5xrz.pdb1.gz) 338 Kb
  • CSU: Contacts of Structural Units for 5XRZ
  • Structure Factors (779 Kb)
  • Retrieve 5XRZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XRZ from S2C, [Save to disk]
  • View 5XRZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XRZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5xrz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xrz_F] [5xrz_I] [5xrz_B] [5xrz_A] [5xrz_L] [5xrz_E] [5xrz_D] [5xrz_H] [5xrz_C] [5xrz_K] [5xrz_G] [5xrz_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XRZ
  • Community annotation for 5XRZ at PDBWiki (http://pdbwiki.org)

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