5XS0 Recombination date Jun 11, 2017
title Structure Of A Ssdna Bound To The Outer Dna Binding Site Of
authors M.Saotome, K.Saito, T.Yasuda, S.Sugiyama, H.Kurumizaka, W.Kagawa
compound source
Molecule: Dna Repair Protein Rad52 Homolog
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V;
Fragment: Unp Residues 1-212
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rad52
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: Ssdna (5'-D(Cpcpcpcpcpc)-3')
Chain: W
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Ssdna (5'-D(Cpcpcpcpcpcpcpc)-3')
Chain: X
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Ssdna (5'-D(Cpcpcpcpcpcpcpcpcpc)-3')
Chain: Y
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Ssdna (5'-D(Cpcpcpcpcpcpcpcpc)-3')
Chain: Z
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.221 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.224 164.408 166.087 90.00 90.19 90.00
method X-Ray Diffractionresolution 3.00 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (661 Kb) [Save to disk]
  • Biological Unit Coordinates (5xs0.pdb1.gz) 330 Kb
  • Biological Unit Coordinates (5xs0.pdb2.gz) 330 Kb
  • CSU: Contacts of Structural Units for 5XS0
  • Structure Factors (3142 Kb)
  • Retrieve 5XS0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XS0 from S2C, [Save to disk]
  • View 5XS0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XS0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5xs0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xs0_T] [5xs0_N] [5xs0_B] [5xs0_M] [5xs0_K] [5xs0_O] [5xs0_H] [5xs0_P] [5xs0_Q] [5xs0_L] [5xs0_Y] [5xs0_A] [5xs0_I] [5xs0_W] [5xs0_D] [5xs0_G] [5xs0_U] [5xs0_C] [5xs0_S] [5xs0_V] [5xs0_J] [5xs0_X] [5xs0_Z] [5xs0_R] [5xs0_F] [5xs0_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XS0
  • Community annotation for 5XS0 at PDBWiki (http://pdbwiki.org)

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