5XTC Electron Transport date Jun 19, 2017
title Cryo-Em Structure Of Human Respiratory Complex I Transmembra
authors J.Gu, M.Wu, M.Yang
compound source
Molecule: Nadh Dehydrogenase [Ubiquinone] Iron-Sulfur Prote Mitochondrial;
Chain: Q
Fragment: Unp Residues 34-79
Synonym: Complex I-49kd,Ci-49kd,Nadh-Ubiquinone Oxidoreduct Subunit;
Ec: 1.6.5.3,1.6.99.3
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomple 1;
Chain: S
Synonym: Complex I-Mwfe,Ci-Mwfe,Nadh-Ubiquinone Oxidoreduct Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomple 3;
Chain: U
Synonym: Complex I-B9,Ci-B9,Nadh-Ubiquinone Oxidoreductase Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomple 11;
Chain: V
Synonym: Complex I-B14.7,Ci-B14.7,Nadh-Ubiquinone Oxidoredu Subunit B14.7;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomple 13;
Chain: W
Fragment: Unp Residues 29-144
Synonym: Cell Death Regulatory Protein Grim-19,Complex I-B1 B16.6,Gene Associated With Retinoic And Interferon-Induced 19 Protein,Gene Associated With Retinoic And Ifn-Induced Mo Protein,Nadh-Ubiquinone Oxidoreductase B16.6 Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Acyl Carrier Protein, Mitochondrial
Chain: X
Synonym: Acp,Ci-Sdap,Nadh-Ubiquinone Oxidoreductase 9.6 Kda

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 2, Mitochondrial;
Chain: Y
Fragment: Unp Residues 39-97
Synonym: Complex I-Aggg,Ci-Aggg,Nadh-Ubiquinone Oxidoreduct Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 3;
Chain: Z
Fragment: Unp Residues 10-89
Synonym: Complex I-B12,Ci-B12,Nadh-Ubiquinone Oxidoreductas Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 5, Mitochondrial;
Chain: a
Synonym: Complex I-Sgdh,Ci-Sgdh,Nadh-Ubiquinone Oxidoreduct Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 6;
Chain: b
Synonym: Complex I-B17,Ci-B17,Nadh-Ubiquinone Oxidoreductas Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 8, Mitochondrial;
Chain: c
Synonym: Complex I-Ashi,Ci-Ashi,Nadh-Ubiquinone Oxidoreduct Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 10;
Chain: d
Synonym: Complex I-Pdsw,Ci-Pdsw,Nadh-Ubiquinone Oxidoreduct Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 11, Mitochondrial;
Chain: e
Fragment: Unp Residues 54-150
Synonym: Complex I-Esss,Ci-Esss,Nadh-Ubiquinone Oxidoreduct Subunit,Neuronal Protein 17.3,P17.3;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Subunit C1, Mitochondrial;
Chain: f
Synonym: Complex I-Kfyi,Ci-Kfyi,Nadh-Ubiquinone Oxidoreduct Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Subunit C2
Chain: g
Synonym: Complex I-B14.5b,Ci-B14.5b,Human Lung Cancer Oncog Protein,Hlc-1,Nadh-Ubiquinone Oxidoreductase Subunit B14.5b

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] Iron-Sulfur Prote
Chain: h
Synonym: Complex I-15 Kda,Ci-15 Kda,Nadh-Ubiquinone Oxidore Kda Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh-Ubiquinone Oxidoreductase Chain 2
Chain: I
Ec: 1.6.5.3

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh-Ubiquinone Oxidoreductase Chain 3
Chain: j
Ec: 1.6.5.3

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh-Ubiquinone Oxidoreductase Chain 4l
Chain: k
Ec: 1.6.5.3

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh-Ubiquinone Oxidoreductase Chain 5
Chain: l
Ec: 1.6.5.3

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh-Ubiquinone Oxidoreductase Chain 6
Chain: m
Ec: 1.6.5.3

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 1;
Chain: n
Synonym: Complex I-Mnll,Ci-Mnll,Nadh-Ubiquinone Oxidoreduct Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 4;
Chain: o
Synonym: Complex I-B15,Ci-B15,Nadh-Ubiquinone Oxidoreductas Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 9;
Chain: p
Synonym: Complex I-B22,Ci-B22,Lyr Motif-Containing Protein Ubiquinone Oxidoreductase B22 Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh-Ubiquinone Oxidoreductase Chain 4
Chain: r
Ec: 1.6.5.3

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh-Ubiquinone Oxidoreductase Chain 1
Chain: s
Ec: 1.6.5.3

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomple 8;
Chain: u
Synonym: Complex I-19kd,Ci-19kd,Complex I-Pgiv,Ci-Pgiv,Nadh Ubiquinone Oxidoreductase 19 Kda Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 7;
Chain: v
Synonym: Cell Adhesion Protein Sqm1,Complex I-B18,Ci-B18,Na Ubiquinone Oxidoreductase B18 Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomple 10, Mitochondrial;
Chain: w
Synonym: Complex I-42kd,Ci-42kd,Nadh-Ubiquinone Oxidoreduct Subunit

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.70 Å
ligand
enzyme Oxidoreductase E.C.1.6.5.3 BRENDA
subcellular loc. Membrane localization by OPM: Mitochondrial inner membrane
intermembrane space side
matrix space side
Gene
Ontology
ChainFunctionProcessComponent
S


U


V


X


Y


Z


b


c


d


f


g


h


i


j


k


l


m


n


o


p


r


s


u


v


w


Primary referenceArchitecture of Human Mitochondrial Respiratory Megacomplex I2III2IV2., Guo R, Zong S, Wu M, Gu J, Yang M, Cell. 2017 Sep 7;170(6):1247-1257.e12. doi: 10.1016/j.cell.2017.07.050. Epub 2017, Aug 24. PMID:28844695
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (718 Kb) [Save to disk]
  • Biological Unit Coordinates (5xtc.pdb1.gz) 703 Kb
  • CSU: Contacts of Structural Units for 5XTC
  • Retrieve 5XTC in mmCIF format [Save to disk]
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  • Fold representative 5xtc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xtc_X] [5xtc_j] [5xtc_b] [5xtc_k] [5xtc_n] [5xtc_r] [5xtc_c] [5xtc_Y] [5xtc_Q] [5xtc_u] [5xtc_s] [5xtc_v] [5xtc_m] [5xtc_V] [5xtc_W] [5xtc_l] [5xtc_e] [5xtc_i] [5xtc_p] [5xtc_a] [5xtc_S] [5xtc_o] [5xtc_f] [5xtc_Z] [5xtc_d] [5xtc_h] [5xtc_w] [5xtc_g] [5xtc_U]
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