5XVX Oxidoreductase date Jun 28, 2017
title Crystal Structure Of Aspergillus Niger Glutamate Dehydrogena Complexed With Alpha-Ketoglutarate And Nadph
authors P.Prakash, N.S.Punekar, P.Bhaumik
compound source
Molecule: Glutamate Dehydrogenase
Chain: A
Engineered: Yes
Organism_scientific: Aspergillus Niger
Organism_taxid: 5061
Expression_system: Escherichia Coli-Thermus Thermophilus Sh Vector Ptrh1t;
Expression_system_taxid: 1085940
symmetry Space Group: H 3 2
R_factor 0.135 R_Free 0.148
length a length b length c angle alpha angle beta angle gamma
174.460 174.460 240.430 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand AKG, GOL, NDP, PEG enzyme

Primary referenceStructural basis for the catalytic mechanism and alpha-ketoglutarate cooperativity of glutamate dehydrogenase., Prakash P, Punekar NS, Bhaumik P, J Biol Chem. 2018 Mar 14. pii: RA117.000149. doi: 10.1074/jbc.RA117.000149. PMID:29540480
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (5xvx.pdb1.gz) 547 Kb
  • LPC: Ligand-Protein Contacts for 5XVX
  • CSU: Contacts of Structural Units for 5XVX
  • Structure Factors (2755 Kb)
  • Retrieve 5XVX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XVX from S2C, [Save to disk]
  • View 5XVX in 3D
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  • Visual 3D analysis of 5XVX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xvx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XVX
  • Community annotation for 5XVX at PDBWiki (http://pdbwiki.org)

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