5XXY	Immune System	date	Jul 05, 2017
title	Crystal Structure Of Pd-L1 Complexed With Atezolizumab Fab A
authors	A.Zhou, F.Zhang
compound		source
Molecule: Heavy Chain Of Atezolizumab Fab Chain: H Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293s
Molecule: Light Chain Of Atezolizumab Fab Chain: L Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293s
Molecule: Programmed Cell Death 1 Ligand 1 Chain: A Fragment: Igv Domain,Unp Residues 18-133 Synonym: Programmed Death Ligand 1,B7 Homolog 1,B7-H1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cd274, B7h1, Pdcd1l1, Pdcd1lg1, Pdl1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.236 R_Free 0.295
crystal cell	length a length b length c angle alpha angle beta angle gamma 127.220 72.710 63.800 90.00 104.44 90.00
method	X-Ray Diffraction	resolution	2.90 Å
Primary reference	Structural basis of the therapeutic anti-PD-L1 antibody atezolizumab., Zhang F, Qi X, Wang X, Wei D, Wu J, Feng L, Cai H, Wang Y, Zeng N, Xu T, Zhou A, Zheng Y, Oncotarget. 2017 Oct 6;8(52):90215-90224. doi: 10.18632/oncotarget.21652., eCollection 2017 Oct 27. PMID:29163822

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk] Biological Unit Coordinates (5xxy.pdb1.gz) 243 Kb CSU: Contacts of Structural Units for 5XXY Structure Factors (506 Kb) Retrieve 5XXY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5XXY from S2C, [Save to disk]

View 5XXY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5XXY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5xxy_A] [5xxy_L] [5xxy_H] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5XXY

Community annotation for 5XXY at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---