5XY1 Transferase date Jul 05, 2017
title Crystal Structure Of Lyn Kinase Domain In Complex With N-(1h 6-Yl)-8-(Piperidin-4-Yloxy)-6-Propylquinazolin-2-Amine
authors H.T.Kim
compound source
Molecule: Tyrosine-Protein Kinase Lyn
Chain: A
Fragment: Unp Residues 239-512
Synonym: Lckyes-Related Novel Protein Tyrosine Kinase,V-Ye Yamaguchi Sarcoma Viral Related Oncogene Homolog,P53lyn,P56
Ec: 2.7.10.2
Engineered: Yes
Other_details: N-(1h-Indazol-6-Yl)-8-(Piperidin-4-Yloxy)-6- Propylquinazolin-2-Amine
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lyn, Jtk8
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783
symmetry Space Group: H 3
R_factor 0.214 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.864 128.864 55.123 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand 8H0 enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (5xy1.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 5XY1
  • CSU: Contacts of Structural Units for 5XY1
  • Structure Factors (281 Kb)
  • Retrieve 5XY1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XY1 from S2C, [Save to disk]
  • Re-refined 5xy1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5XY1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XY1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xy1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XY1
  • Community annotation for 5XY1 at PDBWiki (http://pdbwiki.org)

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