5XYF Protein Binding date Jul 07, 2017
title Crystal Structure Of The Human Tin2-Tpp1-Trf2 Telomeric Comp
authors C.Hu, Y.Chen
compound source
Molecule: Terf1-Interacting Nuclear Factor 2
Chain: A
Fragment: Unp Residues 2-202
Synonym: Trf1-Interacting Nuclear Protein 2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tinf2, Tin2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Telomeric Repeat-Binding Factor 2
Chain: C
Fragment: Unp Residues 392-408
Synonym: Ttaggg Repeat-Binding Factor 2,Telomeric Dna-Bindi Protein;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Terf2, Trbf2, Trf2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Adrenocortical Dysplasia Protein Homolog
Chain: B
Fragment: Unp Residues 510-544
Synonym: Pot1 And Tin2-Interacting Protein
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acd, Pip1, Ptop, Tint1, Tpp1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: C 2 2 21
R_factor 0.196 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.222 112.258 121.209 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and functional analyses of the mammalian TIN2-TPP1-TRF2 telomeric complex., Hu C, Rai R, Huang C, Broton C, Long J, Xu Y, Xue J, Lei M, Chang S, Chen Y, Cell Res. 2017 Dec;27(12):1485-1502. doi: 10.1038/cr.2017.144. Epub 2017 Nov 21. PMID:29160297
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (5xyf.pdb1.gz) 79 Kb
  • CSU: Contacts of Structural Units for 5XYF
  • Structure Factors (158 Kb)
  • Retrieve 5XYF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XYF from S2C, [Save to disk]
  • View 5XYF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XYF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5xyf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xyf_C] [5xyf_A] [5xyf_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XYF
  • Community annotation for 5XYF at PDBWiki (http://pdbwiki.org)

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