5XYM		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	MG	enzyme
Gene Ontology	Chain Function Process Component 0 1 2 3 4 C D E F G H J K L M N O P Q R S T U V W X Y Z
Primary reference	Cryo-EM structure of Mycobacterium smegmatis ribosome reveals two unidentified ribosomal proteins close to the functional centers., Li Z, Ge X, Zhang Y, Zheng L, Sanyal S, Gao N, Protein Cell. 2017 Sep 5. doi: 10.1007/s13238-017-0456-9. PMID:28875450

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1643 Kb) [Save to disk] Biological Unit Coordinates (5xym.pdb1.gz) 1629 Kb LPC: Ligand-Protein Contacts for 5XYM CSU: Contacts of Structural Units for 5XYM Retrieve 5XYM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5XYM from S2C, [Save to disk]

View 5XYM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5xym_0] [5xym_1] [5xym_2] [5xym_3] [5xym_4] [5xym_A] [5xym_B] [5xym_C] [5xym_D] [5xym_E] [5xym_F] [5xym_G] [5xym_H] [5xym_J] [5xym_K] [5xym_L] [5xym_M] [5xym_N] [5xym_O] [5xym_P] [5xym_Q] [5xym_R] [5xym_S] [5xym_T] [5xym_U] [5xym_V] [5xym_W] [5xym_X] [5xym_Y] [5xym_Z] [5xym_a] SWISS-PROT database:

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