5XZB Immune System Inhibitor date Jul 12, 2017
title Mouse Cgas Bound To The Inhibitor Ru365
authors J.Vincent, C.Adura, P.Gao, A.Luz, L.Lama, Y.Asano, R.Okamoto, T.Ima J.Aida, K.Rothamel, T.Gogakos, J.Steinberg, S.Reasoner, K.Aso, T. D.J.Patel, J.F.Glickman, M.Ascano
compound source
Molecule: Cyclic Gmp-Amp Synthase
Chain: A
Fragment: Unp Residues 149-505
Synonym: M-Cgas, 2'3'-Cgamp Synthase, Mab-21 Domain-Contain Protein 1;
Ec: 2.7.7.86
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Mb21d1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Apapaptptpgpcpcpgpapapgpap 3');
Chain: E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: Dna (5'-D(Pcpgptpcptptpcpgpgpcpapapt
Chain: F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
symmetry Space Group: I 2 2 2
R_factor 0.213 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.502 98.841 130.201 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.13 Å
ligand A9Y, ZN enzyme Transferase E.C.2.7.7.86 BRENDA
Primary referenceSmall molecule inhibition of cGAS reduces interferon expression in primary macrophages from autoimmune mice., Vincent J, Adura C, Gao P, Luz A, Lama L, Asano Y, Okamoto R, Imaeda T, Aida J, Rothamel K, Gogakos T, Steinberg J, Reasoner S, Aso K, Tuschl T, Patel DJ, Glickman JF, Ascano M, Nat Commun. 2017 Sep 29;8(1):750. doi: 10.1038/s41467-017-00833-9. PMID:28963528
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk]
  • Biological Unit Coordinates (5xzb.pdb1.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 5XZB
  • CSU: Contacts of Structural Units for 5XZB
  • Structure Factors (490 Kb)
  • Retrieve 5XZB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XZB from S2C, [Save to disk]
  • View 5XZB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XZB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xzb_A] [5xzb_E] [5xzb_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XZB
  • Community annotation for 5XZB at PDBWiki (http://pdbwiki.org)

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