5Y22 Sugar Binding Protein date Jul 23, 2017
title Nmr-Based Model Of The 22 Amino Acid Peptide In Polysialyltr Domain (Pstd) Of The Polysialyltransferase St8sia Iv
authors B.Lu, S.M.Liao, J.M.Huang, Z.L.Lu, D.Chen, X.H.Liu, G.P.Zhou, R.B.H
compound source
Molecule: 22aa-Pstd Peptide
Chain: A
Fragment: Unp Residues 258-279
Ec: 2.4.99.-
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand
enzyme Transferase E.C.2.4.99 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (5y22.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 5Y22
  • Original NMR restraints for 5Y22 from PDB
  • Retrieve 5Y22 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Y22 from S2C, [Save to disk]
    • View 5Y22 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5Y22
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5y22_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5Y22
  • Community annotation for 5Y22 at PDBWiki (http://pdbwiki.org)

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