5Y2I Isomerase Inhibitor date Jul 26, 2017
title Phosphoglycerate Mutase 1 (Pgam1) Complexed With Its Inhibit 004a
authors L.Jiang, L.Zhou
compound source
Molecule: Phosphoglycerate Mutase 1
Chain: B, C
Synonym: Bpg-Dependent Pgam 1,Phosphoglycerate Mutase Isozy B;
Ec: 5.4.2.11,5.4.2.4
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pgam1, Pgama, Cdabp0006
Expression_system: Escherichia Coli-Pichia Pastoris Shuttle Ppparg4;
Expression_system_taxid: 1182032
symmetry Space Group: P 21 21 21
R_factor 0.191 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.762 85.036 102.480 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.92 Å
ligand 8KX, CL, MES enzyme Isomerase E.C.5.4.2.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (5y2i.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 5Y2I
  • CSU: Contacts of Structural Units for 5Y2I
  • Structure Factors (1108 Kb)
  • Retrieve 5Y2I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Y2I from S2C, [Save to disk]
    • View 5Y2I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5Y2I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5y2i_B] [5y2i_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5Y2I
  • Community annotation for 5Y2I at PDBWiki (http://pdbwiki.org)

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