5Y36 Cryo-EM structure of SpCas9-sgRNA-DNA ternary complex date
authors Huang, Q., Li, G., Huai, C.
compound source
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 5.20
ligand MG enzyme
  • nuclease activity
  • endonuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity

  • Primary referenceStructural insights into DNA cleavage activation of CRISPR-Cas9 system., Huai C, Li G, Yao R, Zhang Y, Cao M, Kong L, Jia C, Yuan H, Chen H, Lu D, Huang Q, Nat Commun. 2017 Nov 9;8(1):1375. doi: 10.1038/s41467-017-01496-2. PMID:29123204
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk]
  • Biological Unit Coordinates (5y36.pdb1.gz) 255 Kb
  • LPC: Ligand-Protein Contacts for 5Y36
  • CSU: Contacts of Structural Units for 5Y36
  • Retrieve 5Y36 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Y36 from S2C, [Save to disk]
  • View 5Y36 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5Y36
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5y36 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5y36_A] [5y36_D] [5y36_B] [5y36_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5Y36
  • Community annotation for 5Y36 at PDBWiki (http://pdbwiki.org)

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