5Y36 Hydrolase Rna Dna date Jul 27, 2017
title Cryo-Em Structure Of Spcas9-Sgrna-Dna Ternary Complex
authors Q.Huang, G.Li, C.Huai
compound source
Molecule: Crispr-Associated Endonuclease Cas9csn1
Chain: A
Synonym: Spcas9,Spycas9
Ec: 3.1.-.-
Engineered: Yes
Mutation: Yes
 Organism_scientific: Streptococcus Pyogenes Serotype M1
Organism_taxid: 301447
Gene: Cas9, Csn1, Spy_1046
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
Expression_system_plasmid: Pet28a

Molecule: Single-Guide Rna
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_taxid: 10090

Molecule: Complementary Dna Strand
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_taxid: 10090

Molecule: Non-Complementary Dna Strand
Chain: D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_taxid: 10090
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 5.20 Å
ligand MG enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • nuclease activity
  • endonuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity


    • Primary referenceStructural insights into DNA cleavage activation of CRISPR-Cas9 system., Huai C, Li G, Yao R, Zhang Y, Cao M, Kong L, Jia C, Yuan H, Chen H, Lu D, Huang Q, Nat Commun. 2017 Nov 9;8(1):1375. doi: 10.1038/s41467-017-01496-2. PMID:29123204
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (254 Kb) [Save to disk]
  • Biological Unit Coordinates (5y36.pdb1.gz) 249 Kb
  • LPC: Ligand-Protein Contacts for 5Y36
  • CSU: Contacts of Structural Units for 5Y36
  • Retrieve 5Y36 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Y36 from S2C, [Save to disk]
    • View 5Y36 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5Y36
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5y36_A] [5y36_D] [5y36_B] [5y36_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5Y36
  • Community annotation for 5Y36 at PDBWiki (http://pdbwiki.org)

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