5Y3U Transferase date Jul 31, 2017
title Nmr-Based Model Of The 22 Amino Acid Peptide In Polysialyltr Domain (Pstd) Of The Polysialyltransferase St8sia Iv In The Of Polysialic Acid (Polysia)
authors S.M.Liao, X.H.Liu, B.Lu, L.X.Peng, D.Chen, R.B.Huang, G.P.Zhou
compound source
Molecule: Pstd-22aa-Polysia
Chain: A
Fragment: Unp Residues 258-279
Synonym: Cmp-N-Acetylneuraminate-Poly-Alpha-2,8-Sialyltrans
Ec: 2.4.99.-
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand
enzyme Transferase E.C.2.4.99 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (5y3u.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 5Y3U
  • Original NMR restraints for 5Y3U from PDB
  • Retrieve 5Y3U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Y3U from S2C, [Save to disk]
  • View 5Y3U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5Y3U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5y3u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5Y3U
  • Community annotation for 5Y3U at PDBWiki (http://pdbwiki.org)

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