OCA Atlas for 5Y4S

5Y4S

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
D, C, A, I, H, J, F, E, G, B	protein-glutamate O-methyltr...

Primary reference

Structural Analyses Unravel the Molecular Mechanism of Cyclic di-GMP Regulation of Bacterial Chemotaxis via a PilZ Adaptor Protein., Yan XF, Xin L, Yen JT, Zeng Y, Jin S, Cheang QW, Fong RACY, Chiam KH, Liang ZX, Gao YG, J Biol Chem. 2017 Nov 16. pii: M117.815704. doi: 10.1074/jbc.M117.815704. PMID:29146598

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (853 Kb) [Save to disk]

Biological Unit Coordinates (5y4s.pdb1.gz) 91 Kb

Biological Unit Coordinates (5y4s.pdb2.gz) 84 Kb

Biological Unit Coordinates (5y4s.pdb3.gz) 89 Kb

Biological Unit Coordinates (5y4s.pdb4.gz) 87 Kb

Biological Unit Coordinates (5y4s.pdb5.gz) 90 Kb

Biological Unit Coordinates (5y4s.pdb6.gz) 89 Kb

Biological Unit Coordinates (5y4s.pdb7.gz) 90 Kb

Biological Unit Coordinates (5y4s.pdb8.gz) 90 Kb

Biological Unit Coordinates (5y4s.pdb9.gz) 90 Kb

CSU: Contacts of Structural Units for 5Y4S

Structure Factors (1167 Kb)

Retrieve 5Y4S in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5Y4S from S2C, [Save to disk]

View 5Y4S in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5y4s_I] [5y4s_A] [5y4s_B] [5y4s_C] [5y4s_D] [5y4s_E] [5y4s_F] [5y4s_G] [5y4s_H] [5y4s_J]

SWISS-PROT database:

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