5Y5R Hydrolase date Aug 09, 2017
title Crystal Structure Of A Novel Pyrethroid Hydrolase Pyth With
authors D.Q.Xu, T.T.Ran, W.W.Wang
compound source
Molecule: Pyrethroid Hydrolase
Chain: A, B, C, D, E, F
Fragment: Unp Residues 2-280
Engineered: Yes
 Organism_scientific: Sphingobium Faniae
Organism_taxid: 570446
Gene: Pyth
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 42 21 2
R_factor 0.273 R_Free 0.322
crystal
cell
length a length b length c angle alpha angle beta angle gamma
168.857 168.857 123.864 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 8NL, MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (255 Kb) [Save to disk]
  • Biological Unit Coordinates (5y5r.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (5y5r.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (5y5r.pdb3.gz) 45 Kb
  • Biological Unit Coordinates (5y5r.pdb4.gz) 45 Kb
  • Biological Unit Coordinates (5y5r.pdb5.gz) 44 Kb
  • Biological Unit Coordinates (5y5r.pdb6.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 5Y5R
  • CSU: Contacts of Structural Units for 5Y5R
  • Structure Factors (6368 Kb)
  • Retrieve 5Y5R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Y5R from S2C, [Save to disk]
    • View 5Y5R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5Y5R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5y5r_D] [5y5r_A] [5y5r_C] [5y5r_B] [5y5r_F] [5y5r_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5Y5R
  • Community annotation for 5Y5R at PDBWiki (http://pdbwiki.org)

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