5Y5U Transferase Transferase Inhibitor date Aug 09, 2017
title Crystal Structures Of Spleen Tyrosine Kinase In Complex With Inhibitor
authors S.J.Lee, B.I.Lee
compound source
Molecule: Tyrosine-Protein Kinase Syk
Chain: A, B
Fragment: Unp Residues 356-635
Synonym: Spleen Tyrosine Kinase,P72-Syk
Ec: 2.7.10.2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Syk
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1
R_factor 0.238 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.155 42.013 87.660 79.83 90.78 79.60
method X-Ray Diffractionresolution 2.14 Å
ligand 8OU enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal Structures of Spleen Tyrosine Kinase in Complex with Two Novel 4-Aminopyrido[4,3-d] Pyrimidine Derivative Inhibitors., Lee SJ, Choi JS, Bong SM, Hwang HJ, Lee J, Song HJ, Lee J, Kim JH, Koh JS, Lee BI, Mol Cells. 2018 Jun 12. pii: molcells.2018.2219. doi:, 10.14348/molcells.2018.2219. PMID:29890824
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (5y5u.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (5y5u.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 5Y5U
  • CSU: Contacts of Structural Units for 5Y5U
  • Structure Factors (837 Kb)
  • Retrieve 5Y5U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Y5U from S2C, [Save to disk]
    • View 5Y5U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5Y5U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5y5u_A] [5y5u_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5Y5U
  • Community annotation for 5Y5U at PDBWiki (http://pdbwiki.org)

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