5Y5Z date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ADP enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, A, B


F, E, D


G


H


I, K


J, L


M


N


R, Q, Z, X, S, V, O, Y, T, W, P, U


Primary referenceCryo EM structure of intact rotary H(+)-ATPase/synthase from Thermus thermophilus., Nakanishi A, Kishikawa JI, Tamakoshi M, Mitsuoka K, Yokoyama K, Nat Commun. 2018 Jan 8;9(1):89. doi: 10.1038/s41467-017-02553-6. PMID:29311594
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (428 Kb) [Save to disk]
  • Biological Unit Coordinates (5y5z.pdb1.gz) 395 Kb
  • LPC: Ligand-Protein Contacts for 5Y5Z
  • CSU: Contacts of Structural Units for 5Y5Z
  • Retrieve 5Y5Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Y5Z from S2C, [Save to disk]
    • View 5Y5Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5y5z_E] [5y5z_F] [5y5z_G] [5y5z_I] [5y5z_J] [5y5z_A] [5y5z_B] [5y5z_C] [5y5z_D] [5y5z_K] [5y5z_H] [5y5z_L] [5y5z_M] [5y5z_N] [5y5z_O] [5y5z_P] [5y5z_Q] [5y5z_R] [5y5z_S] [5y5z_T] [5y5z_U] [5y5z_V] [5y5z_W] [5y5z_X] [5y5z_Y] [5y5z_Z]
  • SWISS-PROT database:

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