5Y7Y Transcription date Aug 18, 2017
title Crystal Structure Of Ahrrarnt Complex
authors S.Sakurai, T.Shimizu, U.Ohto
compound source
Molecule: Aryl Hydrocarbon Receptor Repressor
Chain: A
Synonym: Ahrr,Class E Basic Helix-Loop-Helix Protein 77,Bhl
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ahrr, Bhlhe77, Kiaa1234
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus

Molecule: Aryl Hydrocarbon Receptor Nuclear Translocator
Chain: B
Fragment: Unp Residues 82-147,154-230,257-271,301-312
Synonym: Arnt Protein
Engineered: Yes
Mutation: Yes

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Arnt
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 41
R_factor 0.234 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.362 78.362 129.784 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceThe crystal structure of the AhRR-ARNT heterodimer reveals the structural basis of the repression of AhR-mediated transcription., Sakurai S, Shimizu T, Ohto U, J Biol Chem. 2017 Oct 27;292(43):17609-17616. doi: 10.1074/jbc.M117.812974. Epub , 2017 Sep 13. PMID:28904176
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (5y7y.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 5Y7Y
  • CSU: Contacts of Structural Units for 5Y7Y
  • Structure Factors (865 Kb)
  • Retrieve 5Y7Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Y7Y from S2C, [Save to disk]
  • View 5Y7Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5Y7Y
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5y7y_B] [5y7y_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5Y7Y
  • Community annotation for 5Y7Y at PDBWiki (http://pdbwiki.org)

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