5Y84 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 8P6, DST enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A


Primary referenceTwo Distinct Substrate Binding Modes for the Normal and Reverse Prenylation of Hapalindoles by the Prenyltransferase AmbP3., Wong CP, Awakawa T, Nakashima Y, Mori T, Zhu Q, Liu X, Abe I, Angew Chem Int Ed Engl. 2018 Jan 8;57(2):560-563. doi: 10.1002/anie.201710682., Epub 2017 Dec 15. PMID:29178634
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (5y84.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (5y84.pdb2.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 5Y84
  • CSU: Contacts of Structural Units for 5Y84
  • Structure Factors (1177 Kb)
  • Retrieve 5Y84 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Y84 from S2C, [Save to disk]
  • View 5Y84 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5y84_A] [5y84_B]
  • SWISS-PROT database:

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