5YAE Hydrolase date Aug 31, 2017
title Ferulic Acid Esterase From Streptomyces Cinnamoneus At 2.4 A Resolution
authors H.Tamura, M.Uraji, E.Mizohata, K.Ogawa, T.Inoue, T.Hatanaka
compound source
Molecule: Esterase
Chain: A
Fragment: Unp Residues 42-383
Ec: 3.1.1.73
Engineered: Yes
Mutation: Yes
Organism_scientific: Streptomyces Cinnamoneus
Organism_taxid: 53446
Gene: Esta
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.181 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.270 71.290 87.720 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ACT, SO4 enzyme Hydrolase E.C.3.1.1.73 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLoop of Streptomyces feruloyl esterase plays an important role in its activity of releasing ferulic acid from biomass., Uraji M, Tamura H, Mizohata E, Arima J, Wan K, Ogawa K, Inoue T, Hatanaka T, Appl Environ Microbiol. 2017 Nov 17. pii: AEM.02300-17. doi:, 10.1128/AEM.02300-17. PMID:29150515
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (5yae.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 5YAE
  • CSU: Contacts of Structural Units for 5YAE
  • Structure Factors (247 Kb)
  • Retrieve 5YAE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YAE from S2C, [Save to disk]
  • View 5YAE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YAE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yae_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YAE
  • Community annotation for 5YAE at PDBWiki (http://pdbwiki.org)

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