5YB5 Hydrolase date Sep 03, 2017
title The Complex Crystal Structure Of Vreh2 Mutant M263n With Sno
authors F.L.Li, F.F.Chen, Q.Chen, X.D.Kong, H.L.Yu, J.H.Xu
compound source
Molecule: Epoxide Hydrolase
Chain: B
Engineered: Yes
Mutation: Yes
Organism_scientific: Vigna Radiata
Organism_common: Mung Bean
Organism_taxid: 157791
Gene: Eh2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 43 21 2
R_factor 0.193 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.297 70.297 121.295 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand SNO enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (5yb5.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 5YB5
  • CSU: Contacts of Structural Units for 5YB5
  • Structure Factors (322 Kb)
  • Retrieve 5YB5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YB5 from S2C, [Save to disk]
  • View 5YB5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YB5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yb5_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YB5
  • Community annotation for 5YB5 at PDBWiki (http://pdbwiki.org)

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