5YBB		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	SAM	enzyme
Gene Ontology	Chain Function Process Component C, A, B, E site-specific DNA-methyltran... D, G endonuclease activity
Primary reference	Structural basis underlying complex assembly and conformational transition of the type I R-M system., Liu YP, Tang Q, Zhang JZ, Tian LF, Gao P, Yan XX, Proc Natl Acad Sci U S A. 2017 Oct 17;114(42):11151-11156. doi:, 10.1073/pnas.1711754114. Epub 2017 Oct 2. PMID:28973912

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (663 Kb) [Save to disk] Biological Unit Coordinates (5ybb.pdb1.gz) 649 Kb LPC: Ligand-Protein Contacts for 5YBB CSU: Contacts of Structural Units for 5YBB Structure Factors (991 Kb) Retrieve 5YBB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YBB from S2C, [Save to disk]

View 5YBB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ybb_A] [5ybb_B] [5ybb_C] [5ybb_D] [5ybb_E] [5ybb_G] [5ybb_H] [5ybb_I] SWISS-PROT database:

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