5YBU Cell Adhesion date Sep 05, 2017
title Structure Of The Kank1 Ankyrin Domain In Complex With Kif21a
authors Q.Guo, S.Liao, J.Min, C.Xu, Structural Genomics Consortium (Sgc)
compound source
Molecule: Kn Motif And Ankyrin Repeat Domain-Containing Pro
Chain: A
Fragment: Unp Residues 1080-1329
Synonym: Ankyrin Repeat Domain-Containing Protein 15,Kidney Repeat-Containing Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kank1, Ankrd15, Kank, Kiaa0172
Expression_system: Escherichia Coli-Thermus Thermophilus Sh Vector Ptrh1t;
Expression_system_taxid: 1085940

Molecule: Kinesin-Like Protein Kif21a
Chain: B
Fragment: Unp Residues 1146-1167
Synonym: Kinesin-Like Protein Kif2,Renal Carcinoma Antigen
Engineered: Yes
Other_details: Kif21a (1146-1167)

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kif21a, Kiaa1708, Kif2
Expression_system: Escherichia Coli-Thermus Thermophilus Sh Vector Ptrh1t;
Expression_system_taxid: 1085940
symmetry Space Group: P 21 21 21
R_factor 0.222 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.648 51.624 137.609 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.89 Å
Primary referenceStructural basis for the recognition of kinesin family member 21A (KIF21A) by the ankyrin domains of KANK1 and KANK2 proteins., Guo Q, Liao S, Zhu Z, Li Y, Li F, Xu C, J Biol Chem. 2017 Nov 28. pii: M117.817494. doi: 10.1074/jbc.M117.817494. PMID:29183992
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (5ybu.pdb1.gz) 83 Kb
  • CSU: Contacts of Structural Units for 5YBU
  • Structure Factors (430 Kb)
  • Retrieve 5YBU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YBU from S2C, [Save to disk]
  • View 5YBU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YBU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ybu_B] [5ybu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YBU
  • Community annotation for 5YBU at PDBWiki (http://pdbwiki.org)

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