5YD8 Dna Binding Protein date Sep 12, 2017
title Crystal Structure Of Human Pcna In Complex With Apim Of Huma
authors H.Hashimoto, R.Tagata
compound source
Molecule: Proliferating Cell Nuclear Antigen
Chain: Y, X, Z
Synonym: Pcna,Cyclin
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pcna
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Zranb3
Chain: W, U, V
Fragment: Unp Residues 1069-1079
Synonym: Annealing Helicase 2,Ah2,Zinc Finger Ran-Binding D Containing Protein 3;
Ec: 3.6.4.-,3.1.-.-
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 32 2 1
R_factor 0.219 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.678 83.678 194.928 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand
enzyme Hydrolase E.C.3.6.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
Z, X, Y


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (248 Kb) [Save to disk]
  • Biological Unit Coordinates (5yd8.pdb1.gz) 81 Kb
  • Biological Unit Coordinates (5yd8.pdb2.gz) 84 Kb
  • Biological Unit Coordinates (5yd8.pdb3.gz) 83 Kb
  • CSU: Contacts of Structural Units for 5YD8
  • Structure Factors (1008 Kb)
  • Retrieve 5YD8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YD8 from S2C, [Save to disk]
    • View 5YD8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5YD8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yd8_W] [5yd8_Y] [5yd8_U] [5yd8_X] [5yd8_Z] [5yd8_V]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5YD8
  • Community annotation for 5YD8 at PDBWiki (http://pdbwiki.org)

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