5YDH Hydrolase date Sep 13, 2017
title Crystal Structure Of Acetylcholinesterase Catalytic Subunits Malaria Vector Anopheles Gambiae, 3.2 A
authors Q.Han, H.Guan, H.Robinson, H.Ding, C.Liao, J.Li
compound source
Molecule: Acetylcholinesterase
Chain: A, B
Fragment: Unp Residues 162-737
Synonym: Ache
Engineered: Yes
Organism_scientific: Anopheles Gambiae
Organism_common: African Malaria Mosquito
Organism_taxid: 7165
Gene: Ace, Ace1, Ache1, Agap001356
Expression_system: Komagataella Pastoris
Expression_system_common: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppicza
symmetry Space Group: P 61
R_factor 0.207 R_Free 0.231
length a length b length c angle alpha angle beta angle gamma
148.659 148.659 226.021 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.21 Å
ligand BMA, CO, EPE, GOL, MAN, NAG, SO4 enzyme Hydrolase E.C. BRENDA
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]
  • Biological Unit Coordinates (5ydh.pdb1.gz) 177 Kb
  • LPC: Ligand-Protein Contacts for 5YDH
  • CSU: Contacts of Structural Units for 5YDH
  • Structure Factors (853 Kb)
  • Retrieve 5YDH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YDH from S2C, [Save to disk]
  • View 5YDH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YDH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ydh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ydh_B] [5ydh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YDH
  • Community annotation for 5YDH at PDBWiki (http://pdbwiki.org)

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