5YJ3 Dna Binding Protein Dna date Oct 07, 2017
title Crystal Structure Of Tzap And Telomeric Dna Complex
authors F.Li, Y.Zhao
compound source
Molecule: Dna (5'- D(Cpcptpapapcpcpcptpapapcpcpcptpapapc)-3'
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'- D(Gpgptptpapgpgpgptptpapgpgpgptptpapg)-3'
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Telomere Zinc Finger-Associated Protein
Chain: C, D
Fragment: Unp Residues 516-620
Synonym: Tzap,Krueppel-Related Zinc Finger Protein 3,Hkr3,Z And Btb Domain-Containing Protein 48,Zinc Finger Protein 85
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zbtb48, Hkr3, Tzap, Znf855
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.226 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.713 56.713 226.229 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand ZN enzyme
Primary referenceThe 11th C2H2 zinc finger and an adjacent C-terminal arm are responsible for TZAP recognition of telomeric DNA., Zhao Y, Zhang G, He C, Mei Y, Shi Y, Li F, Cell Res. 2017 Nov 14. pii: cr2017141. doi: 10.1038/cr.2017.141. PMID:29134956
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (5yj3.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 5YJ3
  • CSU: Contacts of Structural Units for 5YJ3
  • Structure Factors (315 Kb)
  • Retrieve 5YJ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YJ3 from S2C, [Save to disk]
  • View 5YJ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YJ3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yj3_B] [5yj3_C] [5yj3_A] [5yj3_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YJ3
  • Community annotation for 5YJ3 at PDBWiki (http://pdbwiki.org)

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