5YJE Gene Regulation date Oct 10, 2017
title Crystal Structure Of Hira(644-1017)
authors Y.Sato, M.Senda, T.Senda
compound source
Molecule: Protein Hira
Chain: A, B, C
Fragment: Unp Residues 644-1017
Synonym: Tup1-Like Enhancer Of Split Protein 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hira, Dgcr1, Hir, Tuple1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.202 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
149.990 86.800 99.150 90.00 102.49 90.00
method X-Ray Diffractionresolution 2.45 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceFunctional activity of the H3.3 histone chaperone complex HIRA requires trimerization of the HIRA subunit., Ray-Gallet D, Ricketts MD, Sato Y, Gupta K, Boyarchuk E, Senda T, Marmorstein R, Almouzni G, Nat Commun. 2018 Aug 6;9(1):3103. doi: 10.1038/s41467-018-05581-y. PMID:30082790
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (5yje.pdb1.gz) 139 Kb
  • CSU: Contacts of Structural Units for 5YJE
  • Structure Factors (1114 Kb)
  • Retrieve 5YJE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YJE from S2C, [Save to disk]
  • View 5YJE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YJE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5yje from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yje_C] [5yje_B] [5yje_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YJE
  • Community annotation for 5YJE at PDBWiki (http://pdbwiki.org)

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