5YKG Membrane Protein date Oct 14, 2017
title Structure Of Pancreatic Atp-Sensitive Potassium Channel Boun Glibenclamide And Atpgammas (Class2 At 4.57a)
authors L.Chen, J.X.Wu
compound source
Molecule: Atp-Sensitive Inward Rectifier Potassium Channel
Chain: A, C, E, G
Synonym: Inward Rectifier K(+) Channel Kir6.2,Potassium Cha Inwardly Rectifying Subfamily J Member 11;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Kcnj11
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Atp-Binding Cassette Sub-Family C Member 8 Isofor
Chain: B, D, F, H
Synonym: Sur1
Engineered: Yes

Organism_scientific: Mesocricetus Auratus
Organism_common: Golden Hamster
Organism_taxid: 10036
Gene: Abcc8
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.57 Å
ligand AGS, GBM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G
  • ATP-activated inward rectifi...


  • F, B, H, D


    Primary referenceLigand binding and conformational changes of SUR1 subunit in pancreatic ATP-sensitive potassium channels., Wu JX, Ding D, Wang M, Kang Y, Zeng X, Chen L, Protein Cell. 2018 Mar 28. pii: 10.1007/s13238-018-0530-y. doi:, 10.1007/s13238-018-0530-y. PMID:29594720
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1013 Kb) [Save to disk]
  • Biological Unit Coordinates (5ykg.pdb1.gz) 999 Kb
  • LPC: Ligand-Protein Contacts for 5YKG
  • CSU: Contacts of Structural Units for 5YKG
  • Retrieve 5YKG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YKG from S2C, [Save to disk]
  • View 5YKG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YKG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ykg_E] [5ykg_G] [5ykg_B] [5ykg_H] [5ykg_D] [5ykg_C] [5ykg_A] [5ykg_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YKG
  • Community annotation for 5YKG at PDBWiki (http://pdbwiki.org)

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