5YLZ		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	GTP, IHP, MG, ZN	enzyme
Gene Ontology	Chain Function Process Component A metallopeptidase activity C G U2-type catalytic step 1 spl... H U2-type catalytic step 1 spl... U2-type catalytic step 2 spl... I U2-type catalytic step 1 spl... U2-type catalytic step 2 spl... J U2-type catalytic step 1 spl... K U2-type catalytic step 1 spl... U2-type catalytic step 2 spl... L M N U2-type catalytic step 1 spl... U2-type catalytic step 2 spl... O P Q U2-type catalytic step 1 spl... U2-type catalytic step 2 spl... R S T U V W a, h b, i c, j g, n k, d l, e m, f o p r, s, q, t U2-type catalytic step 1 spl...
Primary reference	Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae., Bai R, Yan C, Wan R, Lei J, Shi Y, Cell. 2017 Dec 14;171(7):1589-1598.e8. doi: 10.1016/j.cell.2017.10.038. Epub 2017, Nov 16. PMID:29153833

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1569 Kb) [Save to disk] Biological Unit Coordinates (5ylz.pdb1.gz) 1522 Kb LPC: Ligand-Protein Contacts for 5YLZ CSU: Contacts of Structural Units for 5YLZ Retrieve 5YLZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YLZ from S2C, [Save to disk]

View 5YLZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5YLZ

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 5ylz from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ylz_A] [5ylz_B] [5ylz_C] [5ylz_D] [5ylz_E] [5ylz_F] [5ylz_G] [5ylz_H] [5ylz_I] [5ylz_J] [5ylz_K] [5ylz_L] [5ylz_M] [5ylz_N] [5ylz_O] [5ylz_P] [5ylz_Q] [5ylz_R] [5ylz_S] [5ylz_T] [5ylz_U] [5ylz_V] [5ylz_W] [5ylz_a] [5ylz_b] [5ylz_c] [5ylz_d] [5ylz_e] [5ylz_f] [5ylz_g] [5ylz_h] [5ylz_i] [5ylz_s] [5ylz_j] [5ylz_r] [5ylz_k] [5ylz_t] [5ylz_l] [5ylz_m] [5ylz_n] [5ylz_o] [5ylz_p] [5ylz_q] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5YLZ

Community annotation for 5YLZ at PDBWiki (http://pdbwiki.org)

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