5YPL		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CL, HIW, SO4, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	The mechanism of NDM-1-catalyzed carbapenem hydrolysis is distinct from that of penicillin or cephalosporin hydrolysis., Feng H, Liu X, Wang S, Fleming J, Wang DC, Liu W, Nat Commun. 2017 Dec 21;8(1):2242. doi: 10.1038/s41467-017-02339-w. PMID:29269938

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk] Biological Unit Coordinates (5ypl.pdb1.gz) 74 Kb Biological Unit Coordinates (5ypl.pdb2.gz) 74 Kb LPC: Ligand-Protein Contacts for 5YPL CSU: Contacts of Structural Units for 5YPL Structure Factors (360 Kb) Retrieve 5YPL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YPL from S2C, [Save to disk]

View 5YPL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ypl_A] [5ypl_B] SWISS-PROT database:

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