5YPT		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
Gene Ontology	Chain Function Process Component A, E, C, B, F, D
Primary reference	Structural and biochemical characterization of the plant type III polyketide synthases of the liverwort Marchantia paleacea., Yu HN, Liu XY, Gao S, Sun B, Zheng HB, Ji M, Cheng AX, Lou HX, Plant Physiol Biochem. 2018 Apr;125:95-105. doi: 10.1016/j.plaphy.2018.01.030., Epub 2018 Jan 31. PMID:29428820

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (369 Kb) [Save to disk] Biological Unit Coordinates (5ypt.pdb1.gz) 126 Kb Biological Unit Coordinates (5ypt.pdb2.gz) 124 Kb Biological Unit Coordinates (5ypt.pdb3.gz) 123 Kb CSU: Contacts of Structural Units for 5YPT Structure Factors (1633 Kb) Retrieve 5YPT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YPT from S2C, [Save to disk]

View 5YPT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ypt_A] [5ypt_B] [5ypt_C] [5ypt_D] [5ypt_E] [5ypt_F] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---