5YSD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	BGC, GLC, MG, MPD	enzyme
Primary reference	Structural and thermodynamic insights into beta-1,2-glucooligosaccharide capture by a solute-binding protein in Listeria innocua., Abe K, Sunagawa N, Terada T, Takahashi Y, Arakawa T, Igarashi K, Samejima M, Nakai H, Taguchi H, Nakajima M, Fushinobu S, J Biol Chem. 2018 Apr 20. pii: RA117.001536. doi: 10.1074/jbc.RA117.001536. PMID:29678880

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (271 Kb) [Save to disk] Biological Unit Coordinates (5ysd.pdb1.gz) 130 Kb Biological Unit Coordinates (5ysd.pdb2.gz) 133 Kb LPC: Ligand-Protein Contacts for 5YSD CSU: Contacts of Structural Units for 5YSD Structure Factors (1312 Kb) Retrieve 5YSD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YSD from S2C, [Save to disk]

View 5YSD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ysd_A] [5ysd_B] SWISS-PROT database:

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