5YU8 Cytosolic Protein date Nov 21, 2017
title Cofilin Decorated Actin Filament
authors K.Tanaka, A.Narita
compound source
Molecule: Actin, Alpha Skeletal Muscle
Chain: A, B, C, D, E
Synonym: Alpha-Actin-1
Engineered: Yes
 Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Gene: Acta1, Acta
Expression_system: Gallus Gallus
Expression_system_taxid: 9031

Molecule: Cofilin-2
Chain: H, I, J
Synonym: Cofilin,Muscle Isoform
Engineered: Yes
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Gene: Cfl2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
ligand ADP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


H, J, I


Primary referenceStructural basis for cofilin binding and actin filament disassembly., Tanaka K, Takeda S, Mitsuoka K, Oda T, Kimura-Sakiyama C, Maeda Y, Narita A, Nat Commun. 2018 May 10;9(1):1860. doi: 10.1038/s41467-018-04290-w. PMID:29749375
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (310 Kb) [Save to disk]
  • Biological Unit Coordinates (5yu8.pdb1.gz) 305 Kb
  • LPC: Ligand-Protein Contacts for 5YU8
  • CSU: Contacts of Structural Units for 5YU8
  • Retrieve 5YU8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YU8 from S2C, [Save to disk]
    • View 5YU8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5YU8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yu8_A] [5yu8_I] [5yu8_J] [5yu8_D] [5yu8_E] [5yu8_C] [5yu8_B] [5yu8_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5YU8
  • Community annotation for 5YU8 at PDBWiki (http://pdbwiki.org)

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