5YV2	Dna Binding Protein	date	Nov 23, 2017
title	Dna Polymerase Iv - Dna Ternary Complex 14
authors	J.Kottur, D.T.Nair
compound		source
Molecule: Dna Polymerase Iv Chain: F, A Synonym: Pol Iv,Translesion Synthesis Polymerase Iv,Tsl Pol Iv; Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Escherichia Coli K-12 Organism_taxid: 83333 Strain: K12 Gene: Dinb, Dinp, B0231, Jw0221 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dtn1 Chain: G, B Engineered: Yes		Synthetic: Yes Organism_scientific: Escherichia Coli K-12 Organism_taxid: 83333
Molecule: Dtn2 Chain: H, C Engineered: Yes		Synthetic: Yes Organism_scientific: Escherichia Coli K-12 Organism_taxid: 83333
symmetry	Space Group: P 1 21 1	R_factor 0.204 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.400 57.250 110.950 90.00 94.75 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	MG, PO4	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component F, A
Primary reference	Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction., Kottur J, Nair DT, Nucleic Acids Res. 2018 Jul 6;46(12):5875-5885. doi: 10.1093/nar/gky402. PMID:29850882

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (298 Kb) [Save to disk] Biological Unit Coordinates (5yv2.pdb1.gz) 146 Kb Biological Unit Coordinates (5yv2.pdb2.gz) 146 Kb LPC: Ligand-Protein Contacts for 5YV2 CSU: Contacts of Structural Units for 5YV2 Structure Factors (3901 Kb) Retrieve 5YV2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YV2 from S2C, [Save to disk]

View 5YV2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5YV2

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5yv2_B] [5yv2_H] [5yv2_A] [5yv2_G] [5yv2_C] [5yv2_F] SWISS-PROT database: Domain organization of by SWISSPFAM

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