5YV8	Transferase	date	Nov 24, 2017
title	Structure Of Camkk2 In Complex With Cki-002
authors	H.Niwa, N.Handa, S.Yokoyama
compound		source
Molecule: Calciumcalmodulin-Dependent Protein Kinase Kinas Chain: A Synonym: Camkk 2,Calciumcalmodulin-Dependent Protein Kinas Beta,Camkk Beta; Ec: 2.7.11.17 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Camkk2, Camkkb, Kiaa0787 Expression_system: Cell-Free Synthesis Expression_system_taxid: 32644 Expression_system_vector_type: Plasmid Expression_system_plasmid: Px070406-05
symmetry	Space Group: P 21 21 21	R_factor 0.164 R_Free 0.213
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.493 76.969 83.895 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.93 Å
ligand	91L, CAS, CL, GOL	enzyme	Transferase E.C.2.7.11.17 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Protein ligand interaction analysis against new CaMKK2 inhibitors by use of X-ray crystallography and the fragment molecular orbital (FMO) method., Takaya D, Niwa H, Mikuni J, Nakamura K, Handa N, Tanaka A, Yokoyama S, Honma T, J Mol Graph Model. 2020 Apr 10;99:107599. doi: 10.1016/j.jmgm.2020.107599. PMID:32348940

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk] Biological Unit Coordinates (5yv8.pdb1.gz) 93 Kb LPC: Ligand-Protein Contacts for 5YV8 CSU: Contacts of Structural Units for 5YV8 Structure Factors (1258 Kb) Retrieve 5YV8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YV8 from S2C, [Save to disk]

View 5YV8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5YV8

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5yv8_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5YV8

Community annotation for 5YV8 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---