5YVD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	GOL	enzyme
Primary reference	Structural and biochemical characterization of endoribonuclease Nsp15 encoded by Middle East respiratory syndrome coronavirus., Zhang L, Li L, Yan L, Ming Z, Jia Z, Lou Z, Rao Z, J Virol. 2018 Aug 22. pii: JVI.00893-18. doi: 10.1128/JVI.00893-18. PMID:30135128

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk] Biological Unit Coordinates (5yvd.pdb1.gz) 330 Kb LPC: Ligand-Protein Contacts for 5YVD CSU: Contacts of Structural Units for 5YVD Structure Factors (645 Kb) Retrieve 5YVD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YVD from S2C, [Save to disk]

View 5YVD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5yvd_A] [5yvd_B] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---