5YWB Membrane Protein date Nov 29, 2017
title Structure Of Pancreatic Atp-Sensitive Potassium Channel Boun Adp (Ctd Class2 At 5.2a)
authors L.Chen, J.X.Wu
compound source
Molecule: Atp-Sensitive Inward Rectifier Potassium Channel
Chain: A, C, E, G
Synonym: Inward Rectifier K(+) Channel Kir6.2,Potassium Cha Inwardly Rectifying Subfamily J Member 11;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Kcnj11
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Atp-Binding Cassette Sub-Family C Member 8 Isofor
Chain: B, D, F, H
Synonym: Sur1
Engineered: Yes

Organism_scientific: Mesocricetus Auratus
Organism_common: Golden Hamster
Organism_taxid: 10036
Gene: Abcc8
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 5.20 Å
ligand ADP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G
  • ATP-activated inward rectifi...


  • F, B, H, D
  • potassium channel activity


  • Primary referenceLigand binding and conformational changes of SUR1 subunit in pancreatic ATP-sensitive potassium channels., Wu JX, Ding D, Wang M, Kang Y, Zeng X, Chen L, Protein Cell. 2018 Mar 28. pii: 10.1007/s13238-018-0530-y. doi:, 10.1007/s13238-018-0530-y. PMID:29594720
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1013 Kb) [Save to disk]
  • Biological Unit Coordinates (5ywb.pdb1.gz) 999 Kb
  • LPC: Ligand-Protein Contacts for 5YWB
  • CSU: Contacts of Structural Units for 5YWB
  • Retrieve 5YWB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YWB from S2C, [Save to disk]
  • View 5YWB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YWB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ywb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ywb_C] [5ywb_D] [5ywb_F] [5ywb_B] [5ywb_A] [5ywb_G] [5ywb_E] [5ywb_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YWB
  • Community annotation for 5YWB at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science