5YWX date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 93C, GOL, GSH, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, B, D, A


Primary referenceCharacterization of crystal water molecules in a high-affinity inhibitor and hematopoietic prostaglandin D synthase complex by interaction energy studies., Takaya D, Inaka K, Omura A, Takenuki K, Kawanishi M, Yabuki Y, Nakagawa Y, Tsuganezawa K, Ogawa N, Watanabe C, Honma T, Aritake K, Urade Y, Shirouzu M, Tanaka A, Bioorg Med Chem. 2018 Sep 1;26(16):4726-4734. doi: 10.1016/j.bmc.2018.08.014., Epub 2018 Aug 11. PMID:30121213
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (5ywx.pdb1.gz) 74 Kb
  • Biological Unit Coordinates (5ywx.pdb2.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 5YWX
  • CSU: Contacts of Structural Units for 5YWX
  • Structure Factors (2213 Kb)
  • Retrieve 5YWX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YWX from S2C, [Save to disk]
  • View 5YWX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ywx_A] [5ywx_B] [5ywx_C] [5ywx_D]
  • SWISS-PROT database:

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