5YXK
Immune System
date
Dec 05, 2017
title
High Resolution Crystal Structure Of Human B7-2 Igv Domain I Space Group
authors
S.Lankipalli, U.A.Ramagopal
compound
source
Molecule
: T-Lymphocyte Activation Antigen Cd86
Chain
: A, B, C, D
Fragment
: Ig-Like V-Type
Synonym
: Activation B7-2 Antigen,B70,Bu63,Ctla-4 Counter-Re B7.2,Fun-1;
Engineered
: Yes
Organism_scientific
: Homo Sapiens
Organism_common
: Human
Organism_taxid
: 9606
Gene
: Cd86, Cd28lg2
Expression_system
: Escherichia Coli
Expression_system_taxid
: 469008
Expression_system_strain
: Bl21(De3)
Expression_system_vector_type
: Plasmid
Expression_system_plasmid
: Pnic28-Bsa4
symmetry
Space Group
: P 1 21 1
R_factor
0.199
R_Free
0.248
crystal
cell
length a
length b
length c
angle alpha
angle beta
angle gamma
32.898
81.640
73.490
90.00
90.32
90.00
method
X-Ray Diffraction
resolution
1.90 Å
Data retrieval
Asymmetric unit, PDB entry:
[header only]
[complete with coordinates]
(78 Kb)
[Save to disk]
Biological Unit Coordinates
(5yxk.pdb1.gz) 38 Kb
Biological Unit Coordinates
(5yxk.pdb2.gz) 37 Kb
CSU:
Contacts of Structural Units
for 5YXK
Structure Factors
(885 Kb)
Retrieve 5YXK in
mmCIF
format
[Save to disk]
SEQRES to COORDINATES
correlation for
5YXK
from
S2C
,
[Save to disk]
View 5YXK in 3D
Proteopedia
, because life has more than 2D.
On
Jmol
, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
On
FirstGlance
, an excellent tool for a guided tour on the structure components, by
E. Martz
.
Visual 3D analysis of 5YXK
Ramachandran
plot from
PDBSum
Structure-derived information
Dipole
moment, from
Dipole Server
at Weizmann Institute
Sequence-derived information
View one-letter amino acid or nucleotide sequence for each chain:
[5yxk_D]
[5yxk_A]
[5yxk_C]
[5yxk_B]
SWISS-PROT
database:
Domain
organization of by
SWISSPFAM
Other resources with information on 5YXK
Community annotation for
5YXK
at
PDBWiki
(http://pdbwiki.org)
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