5Z2T Dna Binding Protein Dna date Jan 04, 2018
title Crystal Structure Of Dna-Bound Dux4-Hd2
authors X.Dong, W.Zhang, H.Wu, J.Huang, M.Zhang, P.Wang, H.Zhang, Z.Chen, S. G.Meng
compound source
Molecule: Double Homeobox Protein 4
Chain: C, D
Synonym: Double Homeobox Protein 10
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dux4, Dux10
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-D(Tptpcptpapaptpcptpapaptpcptpt
Chain: E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 5'-D(Papapgpaptptpapgpaptptpapgpt)-
Chain: F
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 41 21 2
R_factor 0.276 R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.610 51.610 166.550 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.62 Å
Gene
Ontology
ChainFunctionProcessComponent
D, C


Primary referenceStructural basis of DUX4/IGH-driven transactivation., Dong X, Zhang W, Wu H, Huang J, Zhang M, Wang P, Zhang H, Chen Z, Chen SJ, Meng G, Leukemia. 2018 Mar 15. pii: 10.1038/s41375-018-0093-1. doi:, 10.1038/s41375-018-0093-1. PMID:29572508
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (5z2t.pdb1.gz) 75 Kb
  • CSU: Contacts of Structural Units for 5Z2T
  • Structure Factors (203 Kb)
  • Retrieve 5Z2T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Z2T from S2C, [Save to disk]
    • View 5Z2T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5Z2T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5z2t_F] [5z2t_C] [5z2t_D] [5z2t_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5Z2T
  • Community annotation for 5Z2T at PDBWiki (http://pdbwiki.org)

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