5Z3S Signaling Protein date Jan 08, 2018
title Crystal Structure Of Butanol Modified Signaling Protein From (Spb-40) At 1.65 A Resolution
authors P.K.Singh, A.Chaudhary, P.Kaur, S.Sharma, T.P.Singh
compound source
Molecule: Chitinase-3-Like Protein 1
Chain: A
Synonym: Mammary Gland Protein 40,Spb-40
 Organism_scientific: Bubalus Bubalis
Organism_common: Domestic Water Buffalo
Organism_taxid: 89462
symmetry Space Group: P 21 21 21
R_factor 0.165 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.142 66.553 106.005 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand 1BO, MPD, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA glycoprotein from mammary gland secreted during involution promotes apoptosis: Structural and biological studies., Chaudhary A, Kumar V, Singh PK, Sharma P, Bairagya HR, Kaur P, Sharma S, Chauhan SS, Singh TP, Arch Biochem Biophys. 2018 Mar 7;644:72-80. doi: 10.1016/j.abb.2018.03.006. PMID:29524427
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (5z3s.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 5Z3S
  • CSU: Contacts of Structural Units for 5Z3S
  • Structure Factors (753 Kb)
  • Retrieve 5Z3S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Z3S from S2C, [Save to disk]
    • View 5Z3S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5Z3S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5z3s_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5Z3S
  • Community annotation for 5Z3S at PDBWiki (http://pdbwiki.org)

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