5Z55 Oncoprotein date Jan 17, 2018
title Nmr Solution Structure Of The Kringle Domain Of Human Recept Tyrosine Kinase-Like Orphan Receptor 1 (Ror1)
authors X.Ma, K.F.Hu
compound source
Molecule: Inactive Tyrosine-Protein Kinase Transmembrane Re Ror1;
Chain: A
Fragment: Kringle Domain
Synonym: Tyrosine Kinase-Like Orphan Receptor 1,Neurotrophi Kinase,Receptor-Related 1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ror1, Ntrkr1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Primary referenceBackbone and side-chain chemical shift assignments of the kringle domain of human receptor tyrosine kinase-like orphan receptor 1 (ROR1)., Ma X, Zhang Y, Liu B, Yang J, Hu K, Biomol NMR Assign. 2018 Apr;12(1):145-148. doi: 10.1007/s12104-017-9797-9. Epub, 2018 Jan 8. PMID:29313214
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk]
  • Biological Unit Coordinates (5z55.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 5Z55
  • Original NMR restraints for 5Z55 from PDB
  • Retrieve 5Z55 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Z55 from S2C, [Save to disk]
    • View 5Z55 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5Z55
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5z55_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5Z55
  • Community annotation for 5Z55 at PDBWiki (http://pdbwiki.org)

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