5Z6Y Fluorescent Protein date Jan 25, 2018
title Structure Of Sfyfp48s95c66bpa
authors J.Y.Wang, J.Y.Wang
compound source
Molecule: Green Fluorescent Protein
Chain: A
Synonym: Superfolder Green Fluorescent Protein
Engineered: Yes
Organism_scientific: Aequorea Victoria
Organism_common: Jellyfish
Organism_taxid: 6100
Gene: Gfp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: P 41 21 2
R_factor 0.209 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.574 51.574 179.459 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.87 Å
ligand BF6 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (5z6y.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 5Z6Y
  • CSU: Contacts of Structural Units for 5Z6Y
  • Structure Factors (680 Kb)
  • Retrieve 5Z6Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Z6Y from S2C, [Save to disk]
  • View 5Z6Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5Z6Y
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5z6y_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5Z6Y
  • Community annotation for 5Z6Y at PDBWiki (http://pdbwiki.org)

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