5Z6Z Transcription Dna date Jan 26, 2018
title Crystal Structure Of Human Dux4 Homeodomains Bound To Dna
authors Y.Y.Li, B.X.Wu, J.H.Gan
compound source
Molecule: Double Homeobox Protein 4
Chain: A
Fragment: Homeodomain
Synonym: Double Homeobox Protein 10
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dux4, Dux10
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Cpcpapcptpapapcpcptpapaptpcpapcpapcpc)
Chain: D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'- D(Gpgptpgptpgpaptptpapgpgptptpapgptpgpg)
Chain: E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 32 2 1
R_factor 0.212 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.879 64.879 152.075 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for multiple gene regulation by human DUX4., Li Y, Wu B, Liu H, Gao Y, Yang C, Chen X, Zhang J, Chen Y, Gu Y, Li J, Ma J, Gan J, Biochem Biophys Res Commun. 2018 Oct 12. pii: S0006-291X(18)32202-2. doi:, 10.1016/j.bbrc.2018.10.056. PMID:30322619
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (5z6z.pdb1.gz) 77 Kb
  • CSU: Contacts of Structural Units for 5Z6Z
  • Structure Factors (413 Kb)
  • Retrieve 5Z6Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Z6Z from S2C, [Save to disk]
    • View 5Z6Z in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5Z6Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5z6z_E] [5z6z_A] [5z6z_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5Z6Z
  • Community annotation for 5Z6Z at PDBWiki (http://pdbwiki.org)

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